PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000415.1_g00023.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 152aa    MW: 16960 Da    PI: 10.0035
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000415.1_g00023.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.81e-162372255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              y+G+r +k +g+WvAeIr+p   +kr r++lg++ ++  Aa+a++ a   l+g
  Itr_sc000415.1_g00023.1 23 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFHLRG 72
                             69*****99.**********9...336**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.0892380IPR001471AP2/ERF domain
SMARTSM003803.5E-342386IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-212381IPR016177DNA-binding domain
PfamPF008476.3E-102472IPR001471AP2/ERF domain
PRINTSPR003677.9E-122435IPR001471AP2/ERF domain
CDDcd000182.51E-262481No hitNo description
Gene3DG3DSA:3.30.730.105.2E-302481IPR001471AP2/ERF domain
PRINTSPR003677.9E-126282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MEGSGGAAAE KRKHSRQSQQ EKPYRGIRMR KWGKWVAEIR EPNKRSRIWL GSYSSPVAAA  60
RAYDTAVFHL RGPSARLNFP DCIARDDQLR DLSAADIRKK ATEVGARVDA LQSALHASAA  120
EPTSPTLNQN RVVLFKPDLN EYPSPESSEE DI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A3e-152280463ATERF1
2gcc_A3e-152280463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071928.12e-74PREDICTED: ethylene-responsive transcription factor ERF010-like
SwissprotO221747e-48ERF08_ARATH; Ethylene-responsive transcription factor ERF008
SwissprotQ8LC305e-48RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLK4BUU96e-74K4BUU9_SOLLC; Uncharacterized protein
STRINGSolyc04g078640.1.12e-73(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.13e-49related to AP2 1